Pseudomonas fluorescens SBW25, PFLU0465 (rfaP)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25 - Assembly GCF_000009225.2
GCF_000009225.2|latest
Locus Tag
PFLU0465
Name
rfaP
Replicon chromosome
Genomic location 526461 - 527267 (+ strand)

Cross-References

RefSeq YP_002870141.1
GI 229588022
Entrez 7820314
INSDC CAY46741.1
UniParc UPI00019D9B15
UniProtKB Acc C3KCP9
UniProtKB ID C3KCP9_PSEFS
UniRef100 UniRef100_C3KCP9
UniRef50 UniRef50_Q9HUF7
UniRef90 UniRef90_C3KCP9

Product

Feature Type CDS
Coding Frame 1
Product Name
lipopolysaccharide core biosynthesis protein
Synonyms
Evidence for Translation
Charge (pH 7) 10.10
Kyte-Doolittle Hydrophobicity Value -0.161
Molecular Weight (kDa) 30.3
Isoelectric Point (pI) 10.00

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 24 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004616 (554 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU0465
Search term: rfaP

Human Homologs

References

No references are associated with this feature.