Pseudomonas fluorescens SBW25, PFLU3797

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU3797
Name
Replicon chromosome
Genomic location 4188992 - 4190272 (- strand)

Cross-References

RefSeq YP_002873351.1
GI 229591232
EC Number 6.1.1.11
Entrez 7821949
INSDC CAY50099.1
UniParc UPI00019DA624
UniProtKB Acc C3JY54
UniProtKB ID SYS_PSEFS
UniRef100 UniRef100_C3JY54
UniRef50 UniRef50_Q8RH11
UniRef90 UniRef90_Q3KA84

Product

Feature Type CDS
Coding Frame 1
Product Name
seryl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -14.17
Kyte-Doolittle Hydrophobicity Value -0.287
Molecular Weight (kDa) 47.1
Isoelectric Point (pI) 4.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 652 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002939 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU3797

Human Homologs

Ensembl 110, assembly GRCh38.p14
seryl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:10537]
E-value: 1.2e-54
Percent Identity: 36.3

References

No references are associated with this feature.