Pseudomonas fluorescens SBW25, PFLU5994 (rpoZ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU5994
Name
rpoZ
Replicon chromosome
Genomic location 6549323 - 6549586 (+ strand)

Cross-References

RefSeq YP_002875478.1
GI 229593359
EC Number 2.7.7.6
Entrez 7816428
INSDC CAY53525.1
UniParc UPI00019DB076
UniProtKB Acc C3K482
UniProtKB ID RPOZ_PSEFS
UniRef100 UniRef100_C3K482
UniRef50 UniRef50_Q4K3R3
UniRef90 UniRef90_Q4K3R3

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA-directed RNA polymerase subunit omega
Synonyms
Evidence for Translation
Charge (pH 7) -10.79
Kyte-Doolittle Hydrophobicity Value -0.221
Molecular Weight (kDa) 9.8
Isoelectric Point (pI) 4.03

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 261 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004906 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU5994
Search term: rpoZ

Human Homologs

References

No references are associated with this feature.