Pseudomonas fluorescens A506, PflA506_4890 (rpsU)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens A506 - Assembly GCF_000262325.2
GCF_000262325.2|latest |
| Locus Tag |
PflA506_4890
|
| Name |
rpsU
|
| Replicon | chromosome |
| Genomic location | 5365793 - 5366008 (+ strand) |
Cross-References
| RefSeq | YP_006326281.1 |
| GI | 387895984 |
| Entrez | 12960325 |
| INSDC | AFJ54723.1 |
| NCBI Locus Tag | PflA506_4890 |
| UniParc | UPI0000008490 |
| UniProtKB Acc | I2BKE0 |
| UniProtKB ID | I2BKE0_PSEFL |
| UniRef100 | UniRef100_Q48NU9 |
| UniRef50 | UniRef50_B4RY34 |
| UniRef90 | UniRef90_C1DIY4 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
30S ribosomal protein S21
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 13.19 |
| Kyte-Doolittle Hydrophobicity Value | -1.032 |
| Molecular Weight (kDa) | 8.4 |
| Isoelectric Point (pI) | 11.44 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 96.8 |
| 7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 95.8 |
| 7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 95.8 |
| 6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 96.8 |
| 7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 95.8 |
| 7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 95.8 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 357 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000562 (505 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PflA506_4890
Search term: rpsU
Search term: 30S ribosomal protein S21
|
Human Homologs
References
No references are associated with this feature.