Pseudomonas fluorescens A506, PflA506_4892 (rpoD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens A506 - Assembly GCF_000262325.2
GCF_000262325.2|latest |
| Locus Tag |
PflA506_4892
|
| Name |
rpoD
|
| Replicon | chromosome |
| Genomic location | 5368489 - 5370336 (+ strand) |
Cross-References
| RefSeq | YP_006326283.1 |
| GI | 387895986 |
| Entrez | 12960327 |
| INSDC | AFJ58618.1 |
| NCBI Locus Tag | PflA506_4892 |
| UniParc | UPI00025E90E8 |
| UniProtKB Acc | I2BWI5 |
| UniProtKB ID | I2BWI5_PSEFL |
| UniRef100 | UniRef100_I2BWI5 |
| UniRef50 | UniRef50_P00579 |
| UniRef90 | UniRef90_P52326 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
RNA polymerase sigma factor RpoD
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -25.81 |
| Kyte-Doolittle Hydrophobicity Value | -0.514 |
| Molecular Weight (kDa) | 69.2 |
| Isoelectric Point (pI) | 4.73 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000559 (552 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PflA506_4892
Search term: rpoD
Search term: RNA polymerase sigma factor RpoD
|
Human Homologs
References
No references are associated with this feature.