Pseudomonas putida S16, PPS_0039

Gene Feature Overview

Strain	Pseudomonas putida S16 GCF_000219705.1|latest
Locus Tag	PPS_0039
Name
Replicon	chromosome
Genomic location	43159 - 44088 (- strand)

Cross-References

RefSeq	YP_004699508.1
GI	339484980
Entrez	10935711
INSDC	AEJ10628.1
NCBI Locus Tag	PPS_0039
UniParc	UPI0002172352
UniProtKB Acc	F8FU78
UniProtKB ID	F8FU78_PSEP6
UniRef100	UniRef100_A0A099N977
UniRef50	UniRef50_G8PX81
UniRef90	UniRef90_Q88RQ3

Product

Feature Type	CDS
Coding Frame	1
Product Name	glycine betaine ABC transporter substrate-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.38
Kyte-Doolittle Hydrophobicity Value	-0.156
Molecular Weight (kDa)	33.8
Isoelectric Point (pI)	6.89

Subcellular localization

Individual Mappings	Localization Confidence PMID Periplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 135 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000030 (491 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PPS_0039 Search term: glycine betaine ABC transporter substrate-binding protein

Human Homologs

References