Pseudomonas putida S16, PPS_0126

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_0126
Name
Replicon chromosome
Genomic location 129573 - 130793 (+ strand)

Cross-References

RefSeq YP_004699595.1
GI 339485067
Entrez 10935798
INSDC AEJ10715.1
NCBI Locus Tag PPS_0126
UniParc UPI0002172422
UniProtKB Acc F8FVL4
UniProtKB ID F8FVL4_PSEP6
UniRef100 UniRef100_F8FVL4
UniRef50 UniRef50_I3KL88
UniRef90 UniRef90_Q88RH1

Product

Feature Type CDS
Coding Frame 1
Product Name
L-carnitine dehydratase/bile acid-inducible protein F
Synonyms
Evidence for Translation
Charge (pH 7) -5.40
Kyte-Doolittle Hydrophobicity Value -0.086
Molecular Weight (kDa) 43585.2
Isoelectric Point (pI) 5.67

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 311 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000437 (549 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_0126

Human Homologs

Ensembl 97, assembly GRCh38.p12
succinyl-CoA:glutarate-CoA transferase [Source:HGNC Symbol;Acc:HGNC:16001]
E-value: 2.5e-98
Percent Identity: 44.4

References

No references are associated with this feature.