Pseudomonas putida S16, PPS_0348

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_0348
Name
Replicon chromosome
Genomic location 412588 - 413106 (- strand)

Cross-References

RefSeq YP_004699813.1
GI 339485285
Entrez 10936016
INSDC AEJ10933.1
NCBI Locus Tag PPS_0348
UniParc UPI00021726C4
UniProtKB Acc F8FZM3
UniProtKB ID F8FZM3_PSEP6
UniRef100 UniRef100_F8FZM3
UniRef50 UniRef50_Q4K4S1
UniRef90 UniRef90_B1JE65

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor
Synonyms
Evidence for Translation
Charge (pH 7) 2.61
Kyte-Doolittle Hydrophobicity Value -0.221
Molecular Weight (kDa) 19.4
Isoelectric Point (pI) 8.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 190 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000463 (1798 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_0348

Human Homologs

References

No references are associated with this feature.