Pseudomonas putida S16, PPS_1420

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_1420
Name
Replicon chromosome
Genomic location 1566859 - 1568076 (+ strand)

Cross-References

RefSeq YP_004700875.1
GI 339486347
Entrez 10937078
INSDC AEJ11995.1
NCBI Locus Tag PPS_1420
UniParc UPI000217390A
UniProtKB Acc F8G3Q6
UniProtKB ID F8G3Q6_PSEP6
UniRef100 UniRef100_F8G3Q6
UniRef50 UniRef50_G3XD58
UniRef90 UniRef90_I7C6W5

Product

Feature Type CDS
Coding Frame 1
Product Name
lipopolysaccharide ABC export system ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -9.17
Kyte-Doolittle Hydrophobicity Value -0.006
Molecular Weight (kDa) 44277.0
Isoelectric Point (pI) 5.57

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001312 (616 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_1420

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value: 6.6e-19
Percent Identity: 27.0

References

No references are associated with this feature.