Pseudomonas putida S16, PPS_1652

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_1652
Name
Replicon chromosome
Genomic location 1847918 - 1848484 (+ strand)

Cross-References

RefSeq YP_004701105.1
GI 339486577
Entrez 10937308
INSDC AEJ12225.1
NCBI Locus Tag PPS_1652
UniParc UPI00005FDE0D
UniProtKB Acc F8FTE3
UniProtKB ID F8FTE3_PSEP6
UniRef100 UniRef100_V9WV93
UniRef50 UniRef50_A4VL64
UniRef90 UniRef90_Q1ICM0

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor SigX
Synonyms
Evidence for Translation
Charge (pH 7) -1.13
Kyte-Doolittle Hydrophobicity Value -0.714
Molecular Weight (kDa) 22.4
Isoelectric Point (pI) 6.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 473 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003619 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_1652

Human Homologs

References

No references are associated with this feature.