Pseudomonas putida S16, PPS_1900

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_1900
Name
Replicon chromosome
Genomic location 2128181 - 2128864 (- strand)

Cross-References

RefSeq YP_004701349.1
GI 339486821
Entrez 10937552
INSDC AEJ12469.1
NCBI Locus Tag PPS_1900
UniParc UPI00021736F2
UniProtKB Acc F8FXI0
UniProtKB ID F8FXI0_PSEP6
UniRef100 UniRef100_A0A099MZJ6
UniRef50 UniRef50_B7I8Q8
UniRef90 UniRef90_Q1IC91

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -1.34
Kyte-Doolittle Hydrophobicity Value -0.115
Molecular Weight (kDa) 24.4
Isoelectric Point (pI) 6.64

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002712 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_1900

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 5.8e-16
Percent Identity: 33.5
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 5.8e-16
Percent Identity: 33.5
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 5.8e-16
Percent Identity: 33.5

References

No references are associated with this feature.