Pseudomonas putida S16, PPS_2840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_2840
Name
Replicon chromosome
Genomic location 3157973 - 3158959 (+ strand)

Cross-References

RefSeq YP_004702271.1
GI 339487743
Entrez 10938474
INSDC AEJ13391.1
NCBI Locus Tag PPS_2840
UniParc UPI0002173FBD
UniProtKB Acc F8FXM7
UniProtKB ID F8FXM7_PSEP6
UniRef100 UniRef100_F8FXM7
UniRef50 UniRef50_S3MM54
UniRef90 UniRef90_Q88IA3

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion protein
Synonyms
Evidence for Translation
Charge (pH 7) 13.76
Kyte-Doolittle Hydrophobicity Value -0.323
Molecular Weight (kDa) 37646.9
Isoelectric Point (pI) 9.91

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 103 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG016080 (43 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_2840

Human Homologs

References

No references are associated with this feature.