Pseudomonas putida S16, PPS_2848

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_2848
Name
Replicon chromosome
Genomic location 3171716 - 3172234 (+ strand)

Cross-References

RefSeq YP_004702279.1
GI 339487751
Entrez 10938482
INSDC AEJ13399.1
NCBI Locus Tag PPS_2848
UniParc UPI00021740A3
UniProtKB Acc F8FXN5
UniProtKB ID F8FXN5_PSEP6
UniRef100 UniRef100_A0A099N2D1
UniRef50 UniRef50_Q88DE1
UniRef90 UniRef90_Q88IB0

Product

Feature Type CDS
Coding Frame 1
Product Name
Hcp1 family type VI secretion system effector
Synonyms
Evidence for Translation
Charge (pH 7) -1.35
Kyte-Doolittle Hydrophobicity Value -0.292
Molecular Weight (kDa) 18.5
Isoelectric Point (pI) 6.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 74 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG016074 (38 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_2848

Human Homologs

References

No references are associated with this feature.