Pseudomonas putida S16, PPS_2906

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_2906
Name
Replicon chromosome
Genomic location 3239620 - 3242799 (+ strand)

Cross-References

RefSeq YP_004702335.1
GI 339487807
Entrez 10938538
INSDC AEJ13455.1
NCBI Locus Tag PPS_2906
UniParc UPI00021741BE
UniProtKB Acc F8FYZ0
UniProtKB ID F8FYZ0_PSEP6
UniRef100 UniRef100_A0A099N1R6
UniRef50 UniRef50_Q8EBL9
UniRef90 UniRef90_Q1IB42

Product

Feature Type CDS
Coding Frame 1
Product Name
hydrophobe/amphiphile efflux-1 (HAE1) family protein
Synonyms
Evidence for Translation
Charge (pH 7) -8.67
Kyte-Doolittle Hydrophobicity Value 0.318
Molecular Weight (kDa) 114.8
Isoelectric Point (pI) 5.64

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1347.0 67.21 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 488 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_2906

Human Homologs

References

No references are associated with this feature.