Pseudomonas putida S16, PPS_3979

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_3979
Name
Replicon chromosome
Genomic location 4497750 - 4498871 (- strand)

Cross-References

RefSeq YP_004703400.1
GI 339488872
Entrez 10939603
INSDC AEJ14520.1
NCBI Locus Tag PPS_3979
UniParc UPI0002173FE5
UniProtKB Acc F8FZ96
UniProtKB ID F8FZ96_PSEP6
UniRef100 UniRef100_A0A099N2S4
UniRef50 UniRef50_W6QWQ4
UniRef90 UniRef90_B1JDB6

Product

Feature Type CDS
Coding Frame 1
Product Name
lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7) -10.53
Kyte-Doolittle Hydrophobicity Value -0.515
Molecular Weight (kDa) 40.8
Isoelectric Point (pI) 4.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 64 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000974 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_3979
Search term: lipoprotein

Human Homologs

References

No references are associated with this feature.