Strain |
Pseudomonas putida S16
GCF_000219705.1|latest |
Locus Tag |
PPS_4266
|
Name |
|
Replicon | chromosome |
Genomic location | 4833496 - 4834128 (- strand) |
RefSeq | YP_004703681.1 |
GI | 339489153 |
Entrez | 10939884 |
INSDC | AEJ14801.1 |
NCBI Locus Tag | PPS_4266 |
UniParc | UPI0002173783 |
UniProtKB Acc | F8G4A8 |
UniProtKB ID | F8G4A8_PSEP6 |
UniRef100 | UniRef100_A0A099N569 |
UniRef50 | UniRef50_Q9AIU0 |
UniRef90 | UniRef90_Q9AIU0 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
TetR family transcriptional regulator
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -3.43 |
Kyte-Doolittle Hydrophobicity Value | -0.225 |
Molecular Weight (kDa) | 23.8 |
Isoelectric Point (pI) | 6.17 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
2UXI | TRANSCRIPTION | 03/28/07 | Phloretin in complex with TtgR | PSEUDOMONAS PUTIDA | 2.5 | X-RAY DIFFRACTION | 97.6 |
7KD8 | TRANSCRIPTION | 10/08/20 | TtgR C137I I141W M167L F168Y mutant in complex with resveratrol | Pseudomonas putida | 1.71 | X-RAY DIFFRACTION | 95.7 |
2UXU | TRANSCRIPTION | 03/29/07 | TtgR in complex with Naringenin | PSEUDOMONAS PUTIDA | 2.3 | X-RAY DIFFRACTION | 97.6 |
2XDN | TRANSCRIPTION | 05/04/10 | Transcription factor TtgR H67A mutant | PSEUDOMONAS PUTIDA | 2.2 | X-RAY DIFFRACTION | 97.1 |
2UXH | TRANSCRIPTION | 03/28/07 | TtgR in complex with Quercetin | PSEUDOMONAS PUTIDA | 2.4 | X-RAY DIFFRACTION | 97.6 |
7K1A | TRANSCRIPTION | 09/07/20 | TtgR quadruple mutant (C137I I141W M167L F168Y) | Pseudomonas putida | 1.75 | X-RAY DIFFRACTION | 95.7 |
2UXP | TRANSCRIPTION | 03/29/07 | TtgR in complex Chloramphenicol | PSEUDOMONAS PUTIDA | 2.7 | X-RAY DIFFRACTION | 97.6 |
7K1C | TRANSCRIPTION | 09/07/20 | TtgR in complex with resveratrol | Pseudomonas putida | 1.9 | X-RAY DIFFRACTION | 97.6 |
2UXO | TRANSCRIPTION | 03/28/07 | TtgR in complex with Tetracycline | PSEUDOMONAS PUTIDA | 2.7 | X-RAY DIFFRACTION | 97.6 |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
Quercetin | DB04216 | DrugBank | 5.1.4 | Q9AIU0 | HTH-type transcriptional regulator TtgR | 97.6 | 210 | 2.1e-111 |
Naringenin | DB03467 | DrugBank | 5.1.4 | Q9AIU0 | HTH-type transcriptional regulator TtgR | 97.6 | 210 | 2.1e-111 |
3-(4-HYDROXYPHENYL)-1-(2,4,6-TRIHYDROXYPHENYL)PROPAN-1-ONE | DB07810 | DrugBank | 5.1.4 | Q9AIU0 | HTH-type transcriptional regulator TtgR | 97.6 | 210 | 2.1e-111 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 347 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG002095 (523 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PPS_4266
Search term: TetR family transcriptional regulator
|