Pseudomonas putida S16, PPS_4796

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_4796
Name
Replicon chromosome
Genomic location 5436143 - 5437528 (+ strand)

Cross-References

RefSeq YP_004704205.1
GI 339489677
Entrez 10940408
INSDC AEJ15325.1
NCBI Locus Tag PPS_4796
UniParc UPI000217368A
UniProtKB Acc F8FU34
UniProtKB ID F8FU34_PSEP6
UniRef100 UniRef100_A0A099N4W7
UniRef50 UniRef50_P21693
UniRef90 UniRef90_A5W9Y5

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7) 7.44
Kyte-Doolittle Hydrophobicity Value -0.021
Molecular Weight (kDa) 49.8
Isoelectric Point (pI) 8.68

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 610 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000446 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_4796

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.5e-60
Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.5e-60
Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.5e-60
Percent Identity: 39.3
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.5e-60
Percent Identity: 39.3

References

No references are associated with this feature.