Pseudomonas putida S16, PPS_5197

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_5197
Name
Replicon chromosome
Genomic location 5892999 - 5893940 (+ strand)

Cross-References

RefSeq YP_004704604.1
GI 339490076
Entrez 10940807
INSDC AEJ15724.1
NCBI Locus Tag PPS_5197
UniParc UPI0002173145
UniProtKB Acc F8G0W2
UniProtKB ID F8G0W2_PSEP6
UniRef100 UniRef100_F8G0W2
UniRef50 UniRef50_Q4K3G6
UniRef90 UniRef90_A0A067A252

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 2.30
Kyte-Doolittle Hydrophobicity Value -0.079
Molecular Weight (kDa) 35330.7
Isoelectric Point (pI) 7.90

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 544 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004987 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_5197

Human Homologs

References

No references are associated with this feature.