Pseudomonas putida BIRD-1, PPUBIRD1_0077 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_0077
Name
gyrB
Replicon chromosome
Genomic location 83521 - 85941 (+ strand)

Cross-References

RefSeq YP_005927992.1
GI 386009715
EC Number 5.99.1.3
Entrez 12518309
NCBI Locus Tag PPUBIRD1_0077

Product

Feature Type CDS
Coding Frame 1
Product Name
protein GyrB
Synonyms
Evidence for Translation
Charge (pH 7) -14.24
Kyte-Doolittle Hydrophobicity Value -0.384
Molecular Weight (kDa) 90.0
Isoelectric Point (pI) 5.76

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 633 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000004 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_0077
Search term: gyrB
Search term: protein GyrB

Human Homologs

Ensembl 110, assembly GRCh38.p14
DNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]
E-value: 2.2e-33
Percent Identity: 26.1

References

No references are associated with this feature.