Pseudomonas putida BIRD-1, PPUBIRD1_1149 (capB)

Gene Feature Overview

Strain	Pseudomonas putida BIRD-1 GCF_000183645.1|latest
Locus Tag	PPUBIRD1_1149
Name	capB
Replicon	chromosome
Genomic location	1298809 - 1299018 (- strand)

Cross-References

RefSeq	YP_005929036.1
GI	386010759
Entrez	12519383
NCBI Locus Tag	PPUBIRD1_1149

Product

Feature Type	CDS
Coding Frame	1
Product Name	CapB
Synonyms
Evidence for Translation
Charge (pH 7)	0.22
Kyte-Doolittle Hydrophobicity Value	-0.429
Molecular Weight (kDa)	7.6
Isoelectric Point (pI)	7.54

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 493 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015263 (217 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PPUBIRD1_1149 Search term: capB Search term: CapB

Human Homologs

Ensembl 107, assembly GRCh38.p13	ENSP00000254231 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 5.6e-07 Percent Identity: 37.7
Ensembl 107, assembly GRCh38.p13	ENSP00000363314 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 5.6e-07 Percent Identity: 37.7

References