Pseudomonas putida BIRD-1, PPUBIRD1_1803

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_1803
Name
Replicon chromosome
Genomic location 2053143 - 2054399 (+ strand)

Cross-References

RefSeq YP_005929671.1
GI 386011394
EC Number 1.1.1.42
Entrez 12520032
NCBI Locus Tag PPUBIRD1_1803

Product

Feature Type CDS
Coding Frame 1
Product Name
isocitrate dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -6.84
Kyte-Doolittle Hydrophobicity Value -0.154
Molecular Weight (kDa) 45672.2
Isoelectric Point (pI) 5.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5M2E OXIDOREDUCTASE 10/12/16 Apo structure of Pseudomonas aeruginosa Isocitrate Dehydrogenase, ICD Pseudomonas aeruginosa 2.7 X-RAY DIFFRACTION 90.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 605 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002929 (494 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_1803

Human Homologs

Ensembl 110, assembly GRCh38.p14
isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:5384]
E-value: 3.9e-42
Percent Identity: 32.3

References

No references are associated with this feature.