Pseudomonas putida BIRD-1, PPUBIRD1_1812

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_1812
Name
Replicon chromosome
Genomic location 2063090 - 2064415 (+ strand)

Cross-References

RefSeq YP_005929680.1
GI 386011403
Entrez 12520041
NCBI Locus Tag PPUBIRD1_1812

Product

Feature Type CDS
Coding Frame 1
Product Name
Recombination factor protein RarA
Synonyms
Evidence for Translation
Charge (pH 7) -4.93
Kyte-Doolittle Hydrophobicity Value -0.400
Molecular Weight (kDa) 49.1
Isoelectric Point (pI) 6.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 651 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002938 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_1812

Human Homologs

Ensembl 110, assembly GRCh38.p14
WRN helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
E-value: 6.8e-77
Percent Identity: 40.9
Ensembl 110, assembly GRCh38.p14
WRN helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
E-value: 6.8e-77
Percent Identity: 40.9
Ensembl 110, assembly GRCh38.p14
WRN helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
E-value: 6.8e-77
Percent Identity: 40.9

References

No references are associated with this feature.