Pseudomonas putida HB3267, B479_09375

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_09375
Name
Replicon chromosome
Genomic location 2086280 - 2087077 (- strand)

Cross-References

RefSeq YP_007228722.1
GI 431801819
Entrez 14288270
INSDC AGA72779.1
NCBI Locus Tag B479_09375
UniParc UPI0002A15343
UniProtKB Acc L0FFR2
UniProtKB ID L0FFR2_PSEPU
UniRef100 UniRef100_L0FFR2
UniRef50 UniRef50_S5EE06
UniRef90 UniRef90_Q88KH9

Product

Feature Type CDS
Coding Frame 1
Product Name
TatD-related deoxyribonuclease
Synonyms
Evidence for Translation
Charge (pH 7) -6.99
Kyte-Doolittle Hydrophobicity Value -0.210
Molecular Weight (kDa) 29.3
Isoelectric Point (pI) 6.04

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3RCM HYDROLASE 03/31/11 crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida Pseudomonas putida 2.05 X-RAY DIFFRACTION 95.1

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 617 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002703 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_09375

Human Homologs

Ensembl 110, assembly GRCh38.p14
TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988]
E-value: 5.1e-19
Percent Identity: 33.3
Ensembl 110, assembly GRCh38.p14
TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988]
E-value: 5.1e-19
Percent Identity: 33.3

References

No references are associated with this feature.