Pseudomonas putida HB3267, B479_16965

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_16965
Name
Replicon chromosome
Genomic location 3715082 - 3716362 (- strand)

Cross-References

RefSeq YP_007230228.1
GI 431803325
EC Number 6.1.1.11
Entrez 14289776
INSDC AGA74285.1
NCBI Locus Tag B479_16965
UniParc UPI0002173FC7
UniProtKB Acc L0FNP5
UniProtKB ID L0FNP5_PSEPU
UniRef100 UniRef100_A0A099N2Z2
UniRef50 UniRef50_Q8RH11
UniRef90 UniRef90_Q88FT2

Product

Feature Type CDS
Coding Frame 1
Product Name
seryl-tRNA ligase
Synonyms
Evidence for Translation
Charge (pH 7) -10.17
Kyte-Doolittle Hydrophobicity Value -0.287
Molecular Weight (kDa) 46.9
Isoelectric Point (pI) 5.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 651 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002939 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_16965
Search term: seryl-tRNA ligase

Human Homologs

Ensembl 110, assembly GRCh38.p14
seryl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:10537]
E-value: 2.5e-52
Percent Identity: 37.2

References

No references are associated with this feature.