Pseudomonas putida HB3267, B479_20830

Gene Feature Overview

Strain	Pseudomonas putida HB3267 GCF_000325725.1|latest
Locus Tag	B479_20830
Name
Replicon	chromosome
Genomic location	4582807 - 4583016 (+ strand)

Cross-References

RefSeq	YP_007230999.1
GI	431804096
Entrez	14290547
INSDC	AGA75056.1
NCBI Locus Tag	B479_20830
UniParc	UPI000000EDAB
UniProtKB Acc	L0FQQ2
UniProtKB ID	L0FQQ2_PSEPU
UniRef100	UniRef100_A0A099N5T9
UniRef50	UniRef50_P0A105
UniRef90	UniRef90_P0A105

Product

Feature Type	CDS
Coding Frame	1
Product Name	CapB
Synonyms
Evidence for Translation
Charge (pH 7)	0.22
Kyte-Doolittle Hydrophobicity Value	-0.429
Molecular Weight (kDa)	7.6
Isoelectric Point (pI)	7.54

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 493 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015263 (205 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: B479_20830 Search term: CapB

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000254231 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 5.7e-07 Percent Identity: 37.7
Ensembl 110, assembly GRCh38.p14	ENSP00000363314 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 5.7e-07 Percent Identity: 37.7

References