Pseudomonas putida HB3267, B479_22650

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida HB3267
GCF_000325725.1|latest
Locus Tag
B479_22650
Name
Replicon chromosome
Genomic location 4981324 - 4981812 (+ strand)

Cross-References

RefSeq YP_007231362.1
GI 431804459
Entrez 14290910
INSDC AGA75419.1
NCBI Locus Tag B479_22650
UniParc UPI00027BCF8D
UniProtKB Acc L0FN94
UniProtKB ID L0FN94_PSEPU
UniRef100 UniRef100_L0FN94
UniRef50 UniRef50_B5E874
UniRef90 UniRef90_B0KHS7

Product

Feature Type CDS
Coding Frame 1
Product Name
Hcp1 family type VI secretion system effector
Synonyms
Evidence for Translation
Charge (pH 7) -0.87
Kyte-Doolittle Hydrophobicity Value -0.278
Molecular Weight (kDa) 17617.7
Isoelectric Point (pI) 5.92

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 75 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG019545 (19 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: B479_22650

Human Homologs

References

No references are associated with this feature.