Pseudomonas syringae pv. syringae B728a, Psyr_0052

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_0052
Name
Replicon chromosome
Genomic location 52475 - 54385 (- strand)

Cross-References

RefSeq YP_233164.1
GI 66043323
Entrez 3365527
INSDC AAY35126.1
NCBI Locus Tag Psyr_0052
UniParc UPI0000394EFE
UniProtKB Acc Q500P6
UniProtKB ID Q500P6_PSEU2
UniRef100 UniRef100_Q500P6
UniRef50 UniRef50_D7HTB7
UniRef90 UniRef90_D7HTB7

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) -15.15
Kyte-Doolittle Hydrophobicity Value -0.403
Molecular Weight (kDa) 70.9
Isoelectric Point (pI) 5.37

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004832 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_0052
Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72]
E-value: 1.2e-90
Percent Identity: 37.5
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72]
E-value: 1.2e-90
Percent Identity: 37.5

References

No references are associated with this feature.