Pseudomonas syringae pv. syringae B728a, Psyr_0315

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_0315
Name
Replicon chromosome
Genomic location 334419 - 334868 (- strand)

Cross-References

RefSeq YP_233425.1
GI 66043584
Entrez 3365791
INSDC AAY35387.1
NCBI Locus Tag Psyr_0315
UniParc UPI000050D65A
UniProtKB Acc Q4ZZN5
UniProtKB ID Q4ZZN5_PSEU2
UniRef100 UniRef100_Q4ZZN5
UniRef50 UniRef50_Q87UR7
UniRef90 UniRef90_Q87UR7

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.08
Kyte-Doolittle Hydrophobicity Value -0.399
Molecular Weight (kDa) 16.9
Isoelectric Point (pI) 6.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2EVE STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10/31/05 X-Ray Crystal Structure of Protein PSPTO5229 from Pseudomonas syringae. Northeast Structural Genomics Consortium Target PsR62 Pseudomonas syringae pv. tomato str. DC3000 1.6 X-RAY DIFFRACTION 92.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 221 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004810 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_0315

Human Homologs

Ensembl 110, assembly GRCh38.p14
thymocyte nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:29560]
E-value: 6.1e-30
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
thymocyte nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:29560]
E-value: 6.1e-30
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
thymocyte nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:29560]
E-value: 6.1e-30
Percent Identity: 42.2

References

No references are associated with this feature.