Pseudomonas syringae pv. syringae B728a, Psyr_0648

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a - Assembly GCF_000012245.1
GCF_000012245.1|latest
Locus Tag
Psyr_0648
Name
Replicon chromosome
Genomic location 735983 - 737011 (- strand)

Cross-References

RefSeq YP_233756.1
GI 66043915
Entrez 3366126
INSDC AAY35718.1
NCBI Locus Tag Psyr_0648
UniParc UPI000039513D
UniProtKB Acc Q4ZYQ4
UniProtKB ID Q4ZYQ4_PSEU2
UniRef100 UniRef100_Q4ZYQ4
UniRef50 UniRef50_Q889K2
UniRef90 UniRef90_Q889K2

Product

Feature Type CDS
Coding Frame 1
Product Name
transporter
Synonyms
Evidence for Translation
Charge (pH 7) 12.72
Kyte-Doolittle Hydrophobicity Value 0.859
Molecular Weight (kDa) 36.8
Isoelectric Point (pI) 9.90

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 158 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003416 (546 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_0648
Search term: transporter

Human Homologs

Ensembl 97, assembly GRCh38.p12
solute carrier family 10 member 7 [Source:HGNC Symbol;Acc:HGNC:23088]
E-value: 2.9e-39
Percent Identity: 32.3
Ensembl 97, assembly GRCh38.p12
solute carrier family 10 member 7 [Source:HGNC Symbol;Acc:HGNC:23088]
E-value: 2.9e-39
Percent Identity: 32.3

References

No references are associated with this feature.