Pseudomonas syringae pv. syringae B728a, Psyr_0918

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a - Assembly GCF_000012245.1
GCF_000012245.1|latest
Locus Tag
Psyr_0918
Name
Replicon chromosome
Genomic location 1042823 - 1044040 (+ strand)

Cross-References

RefSeq YP_234014.1
GI 66044173
Entrez 3366411
INSDC AAY35976.1
NCBI Locus Tag Psyr_0918
UniParc UPI00003951C5
UniProtKB Acc Q4ZXZ6
UniProtKB ID Q4ZXZ6_PSEU2
UniRef100 UniRef100_Q4ZXZ6
UniRef50 UniRef50_G3XD58
UniRef90 UniRef90_S3MTA6

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) -13.43
Kyte-Doolittle Hydrophobicity Value -0.013
Molecular Weight (kDa) 44.2
Isoelectric Point (pI) 4.94

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001312 (616 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_0918
Search term: ABC transporter

Human Homologs

Ensembl 107, assembly GRCh38.p13
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value: 6.8e-20
Percent Identity: 27.0
Ensembl 107, assembly GRCh38.p13
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value: 6.8e-20
Percent Identity: 27.0
Ensembl 107, assembly GRCh38.p13
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value: 6.8e-20
Percent Identity: 27.0

References

No references are associated with this feature.