Pseudomonas syringae pv. syringae B728a, Psyr_3842

Gene Feature Overview

Strain	Pseudomonas syringae pv. syringae B728a (Feil et al., 2005) GCF_000012245.1|latest
Locus Tag	Psyr_3842
Name
Replicon	chromosome
Genomic location	4577266 - 4580112 (+ strand)

Cross-References

RefSeq	YP_236910.1
GI	66047069
Entrez	3369377
INSDC	AAY38872.1
NCBI Locus Tag	Psyr_3842
UniParc	UPI000050DA4A
UniProtKB Acc	Q4ZPQ0
UniProtKB ID	RAPA_PSEU2
UniRef100	UniRef100_Q4ZPQ0
UniRef50	UniRef50_Q8ZRV8
UniRef90	UniRef90_Q87XS2

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent helicase HepA
Synonyms
Evidence for Translation
Charge (pH 7)	-40.83
Kyte-Doolittle Hydrophobicity Value	-0.272
Molecular Weight (kDa)	106662.7
Isoelectric Point (pI)	4.85

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 315 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002310 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Psyr_3842 Search term: ATP-dependent helicase HepA

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000396345 chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701] E-value: 2.6e-09 Percent Identity: 22.0
Ensembl 110, assembly GRCh38.p14	ENSP00000381522 chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701] E-value: 2.6e-09 Percent Identity: 22.0
Ensembl 110, assembly GRCh38.p14	ENSP00000457466 chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701] E-value: 2.6e-09 Percent Identity: 22.0
Ensembl 110, assembly GRCh38.p14	ENSP00000455307 chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701] E-value: 2.6e-09 Percent Identity: 22.0
Ensembl 110, assembly GRCh38.p14	ENSP00000457355 chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701] E-value: 2.6e-09 Percent Identity: 22.0

References