Pseudomonas syringae pv. syringae B728a, Psyr_3878

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a - Assembly GCF_000012245.1
GCF_000012245.1|latest
Locus Tag
Psyr_3878
Name
Replicon chromosome
Genomic location 4618847 - 4619611 (+ strand)

Cross-References

RefSeq YP_236946.1
GI 66047105
Entrez 3369413
INSDC AAY38908.1
NCBI Locus Tag Psyr_3878
UniParc UPI0000395624
UniProtKB Acc Q4ZPL4
UniProtKB ID Q4ZPL4_PSEU2
UniRef100 UniRef100_Q4ZPL4
UniRef50 UniRef50_P35116
UniRef90 UniRef90_D7I4T4

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) -0.37
Kyte-Doolittle Hydrophobicity Value -0.205
Molecular Weight (kDa) 28.1
Isoelectric Point (pI) 6.89

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002651 (322 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_3878
Search term: ABC transporter

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 8.4e-20
Percent Identity: 32.7
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 8.4e-20
Percent Identity: 32.7
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 8.4e-20
Percent Identity: 32.7
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 8.4e-20
Percent Identity: 32.7

References

No references are associated with this feature.