Pseudomonas syringae pv. syringae B728a, Psyr_3878

Gene Feature Overview

Strain	Pseudomonas syringae pv. syringae B728a (Feil et al., 2005) GCF_000012245.1|latest
Locus Tag	Psyr_3878
Name
Replicon	chromosome
Genomic location	4618847 - 4619611 (+ strand)

Cross-References

RefSeq	YP_236946.1
GI	66047105
Entrez	3369413
INSDC	AAY38908.1
NCBI Locus Tag	Psyr_3878
UniParc	UPI0000395624
UniProtKB Acc	Q4ZPL4
UniProtKB ID	Q4ZPL4_PSEU2
UniRef100	UniRef100_Q4ZPL4
UniRef50	UniRef50_P35116
UniRef90	UniRef90_D7I4T4

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-0.37
Kyte-Doolittle Hydrophobicity Value	-0.205
Molecular Weight (kDa)	28.1
Isoelectric Point (pI)	6.89

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002651 (319 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Psyr_3878 Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000496956 ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45] E-value: 9.8e-20 Percent Identity: 32.7
Ensembl 110, assembly GRCh38.p14	ENSP00000352135 ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45] E-value: 9.8e-20 Percent Identity: 32.7
Ensembl 110, assembly GRCh38.p14	ENSP00000392983 ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45] E-value: 9.8e-20 Percent Identity: 32.7

References