Pseudomonas syringae pv. syringae B728a, Psyr_4642

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_4642
Name
Replicon chromosome
Genomic location 5504338 - 5506824 (+ strand)

Cross-References

RefSeq YP_237710.1
GI 66047869
Entrez 3370191
INSDC AAY39672.1
NCBI Locus Tag Psyr_4642
UniParc UPI000050DB28
UniProtKB Acc Q4ZMF0
UniProtKB ID Q4ZMF0_PSEU2
UniRef100 UniRef100_Q4ZMF0
UniRef50 UniRef50_Q4ZMF0
UniRef90 UniRef90_Q4ZMF0

Product

Feature Type CDS
Coding Frame 1
Product Name
PAS:GGDEF
Synonyms
Evidence for Translation
Charge (pH 7) -25.80
Kyte-Doolittle Hydrophobicity Value -0.157
Molecular Weight (kDa) 91898.7
Isoelectric Point (pI) 5.07

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 521 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000558 (491 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_4642
Search term: PAS:GGDEF

Human Homologs

References

No references are associated with this feature.