Pseudomonas aeruginosa PA7, PSPA7_3529 (oprF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa PA7
GCF_000017205.1|latest
Locus Tag
PSPA7_3529
Name
oprF
Replicon chromosome
Genomic location 3657002 - 3658054 (- strand)

Cross-References

RefSeq YP_001348883.1
GI 152985208
Entrez 5353934
INSDC ABR82391.1
NCBI Locus Tag PSPA7_3529
UniParc UPI000002B99B
UniProtKB Acc A6V748
UniProtKB ID A6V748_PSEA7
UniRef100 UniRef100_P13794
UniRef50 UniRef50_P13794
UniRef90 UniRef90_P13794

Product

Feature Type CDS
Coding Frame 1
Product Name
outer membrane protein OprF
Synonyms
Evidence for Translation
Charge (pH 7) -11.67
Kyte-Doolittle Hydrophobicity Value -0.443
Molecular Weight (kDa) 37.6
Isoelectric Point (pI) 4.75

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4RLC TRANSPORT PROTEIN 10/16/14 Crystal structure of the N-terminal beta-barrel domain of Pseudomonas aeruginosa OprF Pseudomonas aeruginosa 1.6 X-RAY DIFFRACTION 100.0
5U1H PEPTIDE BINDING PROTEIN 11/28/16 Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.5 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 441 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003618 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPA7_3529
Search term: oprF

Human Homologs

References

No references are associated with this feature.