Pseudomonas aeruginosa M18, PAM18_0020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa M18
GCF_000226155.1|latest |
| Locus Tag |
PAM18_0020
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 21797 - 22726 (+ strand) |
Cross-References
| RefSeq | YP_005972613.1 |
| GI | 386056091 |
| Entrez | 12564038 |
| NCBI Locus Tag | PAM18_0020 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
putative lysin domain protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 2.49 |
| Kyte-Doolittle Hydrophobicity Value | -0.287 |
| Molecular Weight (kDa) | 34141.7 |
| Isoelectric Point (pI) | 9.14 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6VE2 | PROTEIN TRANSPORT | 12/28/19 | Tetradecameric PilQ bound by TsaP heptamer from Pseudomonas aeruginosa | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 4.3 | ELECTRON MICROSCOPY | 99.7 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 106 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000020 (467 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PAM18_0020
Search term: putative lysin domain protein
|
Human Homologs
References
No references are associated with this feature.