Pseudomonas aeruginosa M18, PAM18_2102 (ligT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas aeruginosa M18
GCF_000226155.1|latest
Locus Tag
PAM18_2102
Name
ligT
Replicon chromosome
Genomic location 2304017 - 2304565 (- strand)

Cross-References

RefSeq YP_005974688.1
GI 386058166
Entrez 12566143
NCBI Locus Tag PAM18_2102

Product

Feature Type CDS
Coding Frame 1
Product Name
2'-5' RNA ligase
Synonyms
Evidence for Translation
Charge (pH 7) 2.59
Kyte-Doolittle Hydrophobicity Value -0.008
Molecular Weight (kDa) 20.2
Isoelectric Point (pI) 8.35

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 130 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002708 (344 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PAM18_2102
Search term: ligT
Search term: 2'-5' RNA ligase

Human Homologs

References

No references are associated with this feature.