Pseudomonas aeruginosa DK2, PADK2_21645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa DK2
GCF_000271365.1|latest |
| Locus Tag |
PADK2_21645
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 4650513 - 4651280 (- strand) |
Cross-References
| RefSeq | YP_006484298.1 |
| GI | 392985711 |
| Entrez | 13172764 |
| NCBI Locus Tag | PADK2_21645 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
AmpDh3
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.57 |
| Kyte-Doolittle Hydrophobicity Value | -0.424 |
| Molecular Weight (kDa) | 28.8 |
| Isoelectric Point (pI) | 6.25 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 4BXE | HYDROLASE/PEPTIDE | 07/10/13 | CRYSTAL STRUCTURE OF AMPDH3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH ANHYDROMURAMIC PENTAPEPTIDE | PSEUDOMONAS AERUGINOSA PAO1; SYNTHETIC CONSTRUCT | 2.95 | X-RAY DIFFRACTION | 99.6 |
| 4BXD | HYDROLASE/PEPTIDE | 07/10/13 | CRYSTAL STRUCTURE OF AMPDH3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH TETRASACCHARIDE PENTAPEPTIDE | PSEUDOMONAS AERUGINOSA PAO1; SYNTHETIC CONSTRUCT | 3.1 | X-RAY DIFFRACTION | 99.6 |
| 4BXJ | HYDROLASE | 07/12/13 | CRYSTAL STRUCTURE OF AMPDH3 FROM PSEUDOMONAS AERUGINOSA | PSEUDOMONAS AERUGINOSA PAO1 | 2.35 | X-RAY DIFFRACTION | 99.6 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 226 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000780 (358 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PADK2_21645
Search term: AmpDh3
|
Human Homologs
References
No references are associated with this feature.