Pseudomonas entomophila L48, PSEEN1222 (capB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas entomophila L48
GCF_000026105.1|latest
Locus Tag
PSEEN1222
Name
capB
Replicon chromosome
Genomic location 1286392 - 1286601 (- strand)

Cross-References

RefSeq YP_606928.1
GI 104780430
Entrez 4090144
INSDC CAK14117.1
UniParc UPI000000EDAB
UniProtKB Acc Q1IDZ1
UniProtKB ID Q1IDZ1_PSEE4
UniRef100 UniRef100_A0A099N5T9
UniRef50 UniRef50_P0A105
UniRef90 UniRef90_P0A105

Product

Feature Type CDS
Coding Frame 1
Product Name
cold shock protein CapB
Synonyms
Evidence for Translation
Charge (pH 7) 0.22
Kyte-Doolittle Hydrophobicity Value -0.429
Molecular Weight (kDa) 7.6
Isoelectric Point (pI) 7.54

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 493 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015263 (217 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEEN1222
Search term: capB

Human Homologs

Ensembl 97, assembly GRCh38.p12
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 4.9e-07
Percent Identity: 37.7
Ensembl 97, assembly GRCh38.p12
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 4.9e-07
Percent Identity: 37.7

References

No references are associated with this feature.