Pseudomonas stutzeri A1501, PST_3874

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas stutzeri A1501
GCF_000013785.1|latest
Locus Tag
PST_3874
Name
Replicon chromosome
Genomic location 4195249 - 4196415 (- strand)

Cross-References

RefSeq YP_001174339.1
GI 146284186
Entrez 5096835
INSDC ABP81497.1
NCBI Locus Tag PST_3874
UniParc UPI00014FEE32
UniProtKB Acc A4VR96
UniProtKB ID A4VR96_PSEU5
UniRef100 UniRef100_A4VR96
UniRef50 UniRef50_P21687
UniRef90 UniRef90_A4VR96

Product

Feature Type CDS
Coding Frame 1
Product Name
lycopene cyclase
Synonyms
Evidence for Translation
Charge (pH 7) 8.17
Kyte-Doolittle Hydrophobicity Value -0.106
Molecular Weight (kDa) 43425.5
Isoelectric Point (pI) 9.93

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 36 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG027078 (43 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PST_3874
Search term: lycopene cyclase

Human Homologs

References

No references are associated with this feature.