Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3828
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas stutzeri ATCC 17588 = LMG 11199 - Assembly GCF_000219605.1
GCF_000219605.1|latest |
| Locus Tag |
PSTAB_3828
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 4127696 - 4128619 (+ strand) |
Cross-References
| RefSeq | YP_004716198.1 |
| GI | 339495905 |
| Entrez | 10944871 |
| NCBI Locus Tag | PSTAB_3828 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
geranylgeranyl pyrophosphate synthetase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -5.43 |
| Kyte-Doolittle Hydrophobicity Value | 0.061 |
| Molecular Weight (kDa) | 32634.1 |
| Isoelectric Point (pI) | 5.61 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 655 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG027081 (44 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSTAB_3828
Search term: geranylgeranyl pyrophosphate synthetase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
decaprenyl diphosphate synthase subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
E-value:
5.5e-09
Percent Identity:
31.0
|
References
No references are associated with this feature.