Pseudomonas stutzeri DSM 4166, PSTAA_3970

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri DSM 4166
GCF_000195105.1|latest
Locus Tag
PSTAA_3970
Name
Replicon chromosome
Genomic location 4259094 - 4260017 (+ strand)

Cross-References

RefSeq YP_005940567.1
GI 386022542
Entrez 12531122
INSDC AEA85825.1
NCBI Locus Tag PSTAA_3970
UniParc UPI0002046FE2
UniProtKB Acc F2N4S4
UniProtKB ID F2N4S4_PSEU6
UniRef100 UniRef100_F2N4S4
UniRef50 UniRef50_A0A098FXC1
UniRef90 UniRef90_A4VR99

Product

Feature Type CDS
Coding Frame 1
Product Name
geranylgeranyl pyrophosphate synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -5.43
Kyte-Doolittle Hydrophobicity Value 0.061
Molecular Weight (kDa) 32634.1
Isoelectric Point (pI) 5.61

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 655 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG027081 (44 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSTAA_3970

Human Homologs

Ensembl 110, assembly GRCh38.p14
decaprenyl diphosphate synthase subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
E-value: 5.5e-09
Percent Identity: 31.0

References

No references are associated with this feature.