Pseudomonas stutzeri CCUG 29243, A458_01780

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri CCUG 29243
GCF_000267545.1|latest
Locus Tag
A458_01780
Name
Replicon chromosome
Genomic location 377419 - 378798 (- strand)

Cross-References

RefSeq YP_006456035.1
GI 392419431
Entrez 13145157
INSDC AFM31612.1
NCBI Locus Tag A458_01780
UniParc UPI0002660924
UniProtKB Acc I4CNF5
UniProtKB ID I4CNF5_PSEST
UniRef100 UniRef100_I4CNF5
UniRef50 UniRef50_P21693
UniRef90 UniRef90_L0GHR7

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7) 4.96
Kyte-Doolittle Hydrophobicity Value 0.011
Molecular Weight (kDa) 49373.7
Isoelectric Point (pI) 8.29

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 603 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000446 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: A458_01780

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 6.6e-59
Percent Identity: 38.6
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 6.6e-59
Percent Identity: 38.6
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 6.6e-59
Percent Identity: 38.6
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 6.6e-59
Percent Identity: 38.6

References

No references are associated with this feature.