Pseudomonas mendocina ymp, Pmen_0060

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina ymp
GCF_000016565.1|latest
Locus Tag
Pmen_0060
Name
Replicon chromosome
Genomic location 56295 - 57209 (+ strand)

Cross-References

RefSeq YP_001185566.1
GI 146305101
EC Number 1.3.3.3
Entrez 5106245
INSDC ABP82834.1
NCBI Locus Tag Pmen_0060
UniParc UPI0001502279
UniProtKB Acc A4XNB8
UniProtKB ID HEM6_PSEMY
UniRef100 UniRef100_A4XNB8
UniRef50 UniRef50_P84155
UniRef90 UniRef90_A4XNB8

Product

Feature Type CDS
Coding Frame 1
Product Name
coproporphyrinogen III oxidase
Synonyms
Evidence for Translation
Charge (pH 7) -9.46
Kyte-Doolittle Hydrophobicity Value -0.442
Molecular Weight (kDa) 34679.6
Isoelectric Point (pI) 5.01

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 278 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000024 (554 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pmen_0060

Human Homologs

Ensembl 97, assembly GRCh38.p12
coproporphyrinogen oxidase [Source:HGNC Symbol;Acc:HGNC:2321]
E-value: 1.7e-72
Percent Identity: 43.4

References

No references are associated with this feature.