Pseudomonas mendocina ymp, Pmen_2312

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina ymp
GCF_000016565.1|latest
Locus Tag
Pmen_2312
Name
Replicon chromosome
Genomic location 2548984 - 2549688 (- strand)

Cross-References

RefSeq YP_001187802.1
GI 146307337
Entrez 5108547
INSDC ABP85070.1
NCBI Locus Tag Pmen_2312
UniParc UPI0000E7A39B
UniProtKB Acc A4XUQ4
UniProtKB ID A4XUQ4_PSEMY
UniRef100 UniRef100_A4XUQ4
UniRef50 UniRef50_J2MZY4
UniRef90 UniRef90_A4XUQ4

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter-like protein
Synonyms
Evidence for Translation
Charge (pH 7) 1.69
Kyte-Doolittle Hydrophobicity Value -0.090
Molecular Weight (kDa) 25.3
Isoelectric Point (pI) 8.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000072 (425 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pmen_2312

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 8 [Source:HGNC Symbol;Acc:HGNC:38]
E-value: 9.8e-15
Percent Identity: 30.5
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 8 [Source:HGNC Symbol;Acc:HGNC:38]
E-value: 9.8e-15
Percent Identity: 30.5
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 8 [Source:HGNC Symbol;Acc:HGNC:38]
E-value: 9.8e-15
Percent Identity: 30.5
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
E-value: 9.8e-15
Percent Identity: 32.2
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
E-value: 9.8e-15
Percent Identity: 32.2

References

No references are associated with this feature.