Pseudomonas mendocina ymp, Pmen_2393

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina ymp
GCF_000016565.1|latest
Locus Tag
Pmen_2393
Name
Replicon chromosome
Genomic location 2639674 - 2641944 (- strand)

Cross-References

RefSeq YP_001187881.1
GI 146307416
EC Number 3.4.21.92
Entrez 5108233
NCBI Locus Tag Pmen_2393

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent Clp protease ATP-binding subunit ClpA
Synonyms
Evidence for Translation
Charge (pH 7) -16.00
Kyte-Doolittle Hydrophobicity Value -0.292
Molecular Weight (kDa) 83799.5
Isoelectric Point (pI) 5.86

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 601 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002932 (548 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pmen_2393

Human Homologs

Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 1.3e-36
Percent Identity: 30.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 1.3e-36
Percent Identity: 30.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 1.3e-36
Percent Identity: 30.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 1.3e-36
Percent Identity: 30.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 1.3e-36
Percent Identity: 30.5

References

No references are associated with this feature.