Pseudomonas mendocina ymp, Pmen_2395

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina ymp
GCF_000016565.1|latest
Locus Tag
Pmen_2395
Name
Replicon chromosome
Genomic location 2642568 - 2642837 (+ strand)

Cross-References

RefSeq YP_001187883.1
GI 146307418
Entrez 5108235
NCBI Locus Tag Pmen_2395

Product

Feature Type CDS
Coding Frame 1
Product Name
cold-shock DNA-binding protein family protein
Synonyms
Evidence for Translation
Charge (pH 7) 0.46
Kyte-Doolittle Hydrophobicity Value -0.098
Molecular Weight (kDa) 9534.8
Isoelectric Point (pI) 7.69

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002930 (552 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pmen_2395

Human Homologs

Ensembl 97, assembly GRCh38.p12
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 5.7e-08
Percent Identity: 35.7
Ensembl 97, assembly GRCh38.p12
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 5.7e-08
Percent Identity: 35.7
Ensembl 97, assembly GRCh38.p12
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 5.7e-08
Percent Identity: 35.7

References

No references are associated with this feature.