Pseudomonas mendocina ymp, Pmen_4446

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina ymp
GCF_000016565.1|latest
Locus Tag
Pmen_4446
Name
Replicon chromosome
Genomic location 4875650 - 4876621 (- strand)

Cross-References

RefSeq YP_001189925.1
GI 146309460
Entrez 5107141
INSDC ABP87193.1
NCBI Locus Tag Pmen_4446
UniParc UPI0000E7DCB1
UniProtKB Acc A4Y0S7
UniProtKB ID A4Y0S7_PSEMY
UniRef100 UniRef100_A4Y0S7
UniRef50 UniRef50_V9TSS5
UniRef90 UniRef90_A4Y0S7

Product

Feature Type CDS
Coding Frame 1
Product Name
TRAP transporter solute receptor TAXI family protein
Synonyms
Evidence for Translation
Charge (pH 7) -1.86
Kyte-Doolittle Hydrophobicity Value -0.211
Molecular Weight (kDa) 34.4
Isoelectric Point (pI) 6.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 207 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG025324 (35 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pmen_4446

Human Homologs

References

No references are associated with this feature.