Pseudomonas mendocina ymp, Pmen_4471

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina ymp
GCF_000016565.1|latest
Locus Tag
Pmen_4471
Name
Replicon chromosome
Genomic location 4900244 - 4901347 (+ strand)

Cross-References

RefSeq YP_001189950.1
GI 146309485
Entrez 5107166
INSDC ABP87218.1
NCBI Locus Tag Pmen_4471
UniParc UPI0000E7DCD2
UniProtKB Acc A4Y0V2
UniProtKB ID A4Y0V2_PSEMY
UniRef100 UniRef100_A4Y0V2
UniRef50 UniRef50_Q8ZLF4
UniRef90 UniRef90_A4Y0V2

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter-like protein
Synonyms
Evidence for Translation
Charge (pH 7) 0.23
Kyte-Doolittle Hydrophobicity Value -0.034
Molecular Weight (kDa) 39811.3
Isoelectric Point (pI) 7.05

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003173 (466 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pmen_4471

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.2e-21
Percent Identity: 34.0
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.2e-21
Percent Identity: 34.0
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 2.2e-21
Percent Identity: 31.1
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.2e-21
Percent Identity: 34.0
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 2.2e-21
Percent Identity: 31.1
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 2.2e-21
Percent Identity: 31.1
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.2e-21
Percent Identity: 34.0
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.2e-21
Percent Identity: 34.0

References

No references are associated with this feature.