Pseudomonas mendocina NK-01, MDS_0010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0010
Name
Replicon chromosome
Genomic location 11822 - 12541 (- strand)

Cross-References

RefSeq YP_004377793.1
GI 330500924
Entrez 10454792
INSDC AEB56041.1
NCBI Locus Tag MDS_0010
UniParc UPI000206E932
UniProtKB Acc F4DV26
UniProtKB ID F4DV26_PSEMN
UniRef100 UniRef100_F4DV26
UniRef50 UniRef50_F6AF48
UniRef90 UniRef90_F4DV26

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) 1.04
Kyte-Doolittle Hydrophobicity Value -0.009
Molecular Weight (kDa) 25538.2
Isoelectric Point (pI) 7.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000072 (425 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0010

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 6 (Langereis blood group) [Source:HGNC Symbol;Acc:HGNC:47]
E-value: 3.0e-11
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 6 (Langereis blood group) [Source:HGNC Symbol;Acc:HGNC:47]
E-value: 3.0e-11
Percent Identity: 32.4

References

No references are associated with this feature.