Pseudomonas mendocina NK-01, MDS_0020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0020
Name
Replicon chromosome
Genomic location 26557 - 27072 (+ strand)

Cross-References

RefSeq YP_004377803.1
GI 330500934
Entrez 10454802
INSDC AEB56051.1
NCBI Locus Tag MDS_0020
UniParc UPI000206E93C
UniProtKB Acc F4DV36
UniProtKB ID F4DV36_PSEMN
UniRef100 UniRef100_F4DV36
UniRef50 UniRef50_Q4K3N8
UniRef90 UniRef90_F4DV36

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.00
Kyte-Doolittle Hydrophobicity Value -0.294
Molecular Weight (kDa) 18.8
Isoelectric Point (pI) 4.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5N8N STRUCTURAL PROTEIN 02/23/17 Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 PSEUDOMONAS AERUGINOSA 3.28 ELECTRON MICROSCOPY 90.1

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 106 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000082 (1260 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0020

Human Homologs

References

No references are associated with this feature.